mxcubecore.HardwareObjects.XSDataAutoprocv1_0#

Functions

`showIndent`(outfile, level)
`warnEmptyAttribute`(_strName, _strTypeName)

Classes

`MixedContainer`(category, content_type, name, ...)
`XSData2DCoordinates`([y, x])
`XSDataAutoprocImport`([configuration, ...])
`XSDataAutoprocImportOut`([status, ...])
`XSDataAutoprocInput`([configuration, ...])
`XSDataFileConversion`([configuration, ...])
`XSDataFileConversionOut`([status, ...])
`XSDataInputControlDimple`([configuration, ...])
`XSDataMinimalXdsIn`([configuration, ...])
`XSDataMinimalXdsOut`([status, succeeded])
`XSDataRange`([end, begin])
`XSDataResCutoff`([configuration, ...])
`XSDataResCutoffResult`([status, total_isig, ...])
`XSDataResultControlDimple`([status, ...])
`XSDataXdsCompletenessEntry`([...])
`XSDataXdsGenerateInput`([configuration, ...])
`XSDataXdsGenerateOutput`([status, gxparm, ...])
`XSDataXdsOutput`([status, xds_run_directory, ...])
`XSDataXdsOutputFile`([configuration, gxparm, ...])
`XSDataXscaleCompletenessEntry`([...])
`XSDataXscaleGeneratedFiles`([status, ...])
`XSDataXscaleInput`([configuration, bins, ...])
`XSDataXscaleInputFile`([configuration, res, ...])
`XSDataXscaleOutput`([status, lp_file, ...])
`XSDataXscaleParsedOutput`([status, ...])
`XSDataXscaleParsingInput`([configuration, ...])

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataAutoprocImport(configuration=None, image_prefix=None, nres=None, res=None, end_image=None, start_image=None, dataCollectionID=None, output_directory=None, input_noanom=None, input_anom=None)[source]#

Bases: XSDataInput

property dataCollectionID#: Property for dataCollectionID

property end_image#: Property for end_image

property image_prefix#: Property for image_prefix

property input_anom#: Property for input_anom

property input_noanom#: Property for input_noanom

property nres#: Property for nres

property output_directory#: Property for output_directory

property res#: Property for res

property start_image#: Property for start_image

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataAutoprocImportOut(status=None, aimless_log_noanom=None, aimless_log_anom=None, pointless_sgstring=None, pointless_sgnumber=None, files=None)[source]#

Bases: XSDataResult

property aimless_log_anom#: Property for aimless_log_anom

property aimless_log_noanom#: Property for aimless_log_noanom

property files#: Property for files

property pointless_sgnumber#: Property for pointless_sgnumber

property pointless_sgstring#: Property for pointless_sgstring

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataAutoprocInput(configuration=None, output_file=None, unit_cell=None, spacegroup=None, nres=None, low_resolution_limit=None, detector_max_res=None, data_collection_id=None, cc_half_cutoff=None, r_value_cutoff=None, isig_cutoff=None, completeness_cutoff=None, res_override=None, input_file=None)[source]#

Bases: XSDataInput

property cc_half_cutoff#: Property for cc_half_cutoff

property completeness_cutoff#: Property for completeness_cutoff

property data_collection_id#: Property for data_collection_id

property detector_max_res#: Property for detector_max_res

property input_file#: Property for input_file

property isig_cutoff#: Property for isig_cutoff

property low_resolution_limit#: Property for low_resolution_limit

property nres#: Property for nres

property output_file#: Property for output_file

property r_value_cutoff#: Property for r_value_cutoff

property res_override#: Property for res_override

property spacegroup#: Property for spacegroup

property unit_cell#: Property for unit_cell

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataFileConversion(configuration=None, image_prefix=None, anom=None, nres=None, res=None, end_image=None, start_image=None, dataCollectionID=None, output_file=None, input_file=None)[source]#

Bases: XSDataInput

property anom#: Property for anom

property dataCollectionID#: Property for dataCollectionID

property end_image#: Property for end_image

property image_prefix#: Property for image_prefix

property input_file#: Property for input_file

property nres#: Property for nres

property output_file#: Property for output_file

property res#: Property for res

property start_image#: Property for start_image

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataFileConversionOut(status=None, aimless_log=None, pointless_sgstring=None, pointless_sgnumber=None)[source]#

Bases: XSDataResult

property aimless_log#: Property for aimless_log

property pointless_sgnumber#: Property for pointless_sgnumber

property pointless_sgstring#: Property for pointless_sgstring

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataInputControlDimple(configuration=None, pdbDirectory=None, pyarchPath=None, mtzFile=None, dataCollectionId=None)[source]#

Bases: XSDataInput

property dataCollectionId#: Property for dataCollectionId

property mtzFile#: Property for mtzFile

property pdbDirectory#: Property for pdbDirectory

property pyarchPath#: Property for pyarchPath

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataMinimalXdsIn(configuration=None, unit_cell=None, spacegroup=None, spot_range=None, resolution_range=None, friedels_law=None, maxjobs=None, maxproc=None, job=None, input_file=None)[source]#

Bases: XSDataInput

property friedels_law#: Property for friedels_law

property input_file#: Property for input_file

property job#: Property for job

property maxjobs#: Property for maxjobs

property maxproc#: Property for maxproc

property resolution_range#: Property for resolution_range

property spacegroup#: Property for spacegroup

property spot_range#: Property for spot_range

property unit_cell#: Property for unit_cell

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataMinimalXdsOut(status=None, succeeded=None)[source]#

Bases: XSDataResult

property succeeded#: Property for succeeded

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataResCutoff(configuration=None, cc_half_cutoff=None, r_value_cutoff=None, isig_cutoff=None, completeness_cutoff=None, res_override=None, total_completeness=None, detector_max_res=None, completeness_entries=None, xds_res=None)[source]#

Bases: XSDataInput

property cc_half_cutoff#: Property for cc_half_cutoff

property completeness_cutoff#: Property for completeness_cutoff

property completeness_entries#: Property for completeness_entries

property detector_max_res#: Property for detector_max_res

property isig_cutoff#: Property for isig_cutoff

property r_value_cutoff#: Property for r_value_cutoff

property res_override#: Property for res_override

property total_completeness#: Property for total_completeness

property xds_res#: Property for xds_res

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataResCutoffResult(status=None, total_isig=None, total_rfactor=None, total_complete=None, bins=None, res=None)[source]#

Bases: XSDataResult

property bins#: Property for bins

property res#: Property for res

property total_complete#: Property for total_complete

property total_isig#: Property for total_isig

property total_rfactor#: Property for total_rfactor

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataResultControlDimple(status=None, dimpleExecutedSuccessfully=None)[source]#

Bases: XSDataResult

property dimpleExecutedSuccessfully#: Property for dimpleExecutedSuccessfully

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXdsGenerateInput(configuration=None, resolution=None, previous_run_dir=None)[source]#

Bases: XSDataInput

property previous_run_dir#: Property for previous_run_dir

property resolution#: Property for resolution

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXdsGenerateOutput(status=None, gxparm=None, integrate_noanom=None, integrate_anom=None, correct_lp_no_anom=None, correct_lp_anom=None, hkl_no_anom=None, hkl_anom=None)[source]#

Bases: XSDataResult

property correct_lp_anom#: Property for correct_lp_anom

property correct_lp_no_anom#: Property for correct_lp_no_anom

property gxparm#: Property for gxparm

property hkl_anom#: Property for hkl_anom

property hkl_no_anom#: Property for hkl_no_anom

property integrate_anom#: Property for integrate_anom

property integrate_noanom#: Property for integrate_noanom

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXdsOutput(status=None, xds_run_directory=None, sg_number=None, unit_cell_constants=None, cell_gamma=None, cell_beta=None, cell_alpha=None, cell_c=None, cell_b=None, cell_a=None, coordinates_of_unit_cell_c_axis=None, coordinates_of_unit_cell_b_axis=None, coordinates_of_unit_cell_a_axis=None, crystal_to_detector_distance=None, detector_origin=None, direct_beam_detector_coordinates=None, direct_beam_coordinates=None, crystal_mosaicity=None, total_completeness=None, completeness_entries=None)[source]#

Bases: XSDataResult

property cell_a#: Property for cell_a

property cell_alpha#: Property for cell_alpha

property cell_b#: Property for cell_b

property cell_beta#: Property for cell_beta

property cell_c#: Property for cell_c

property cell_gamma#: Property for cell_gamma

property completeness_entries#: Property for completeness_entries

property coordinates_of_unit_cell_a_axis#: Property for coordinates_of_unit_cell_a_axis

property coordinates_of_unit_cell_b_axis#: Property for coordinates_of_unit_cell_b_axis

property coordinates_of_unit_cell_c_axis#: Property for coordinates_of_unit_cell_c_axis

property crystal_mosaicity#: Property for crystal_mosaicity

property crystal_to_detector_distance#: Property for crystal_to_detector_distance

property detector_origin#: Property for detector_origin

property direct_beam_coordinates#: Property for direct_beam_coordinates

property direct_beam_detector_coordinates#: Property for direct_beam_detector_coordinates

property sg_number#: Property for sg_number

property total_completeness#: Property for total_completeness

property unit_cell_constants#: Property for unit_cell_constants

property xds_run_directory#: Property for xds_run_directory

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXdsOutputFile(configuration=None, gxparm=None, correct_lp=None)[source]#

Bases: XSDataInput

property correct_lp#: Property for correct_lp

property gxparm#: Property for gxparm

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXscaleGeneratedFiles(status=None, stats_noanom_unmerged=None, lp_noanom_unmerged=None, hkl_noanom_unmerged=None, stats_anom_unmerged=None, lp_anom_unmerged=None, hkl_anom_unmerged=None, stats_noanom_merged=None, lp_noanom_merged=None, hkl_noanom_merged=None, stats_anom_merged=None, lp_anom_merged=None, hkl_anom_merged=None)[source]#

Bases: XSDataResult

property hkl_anom_merged#: Property for hkl_anom_merged

property hkl_anom_unmerged#: Property for hkl_anom_unmerged

property hkl_noanom_merged#: Property for hkl_noanom_merged

property hkl_noanom_unmerged#: Property for hkl_noanom_unmerged

property lp_anom_merged#: Property for lp_anom_merged

property lp_anom_unmerged#: Property for lp_anom_unmerged

property lp_noanom_merged#: Property for lp_noanom_merged

property lp_noanom_unmerged#: Property for lp_noanom_unmerged

property stats_anom_merged#: Property for stats_anom_merged

property stats_anom_unmerged#: Property for stats_anom_unmerged

property stats_noanom_merged#: Property for stats_noanom_merged

property stats_noanom_unmerged#: Property for stats_noanom_unmerged

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXscaleInput(configuration=None, bins=None, sg_number=None, unit_cell_constants=None, xds_files=None, friedels_law=None, merge=None)[source]#

Bases: XSDataInput

property bins#: Property for bins

property friedels_law#: Property for friedels_law

property merge#: Property for merge

property sg_number#: Property for sg_number

property unit_cell_constants#: Property for unit_cell_constants

property xds_files#: Property for xds_files

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXscaleInputFile(configuration=None, res=None, path_noanom=None, path_anom=None)[source]#

Bases: XSDataInput

property path_anom#: Property for path_anom

property path_noanom#: Property for path_noanom

property res#: Property for res

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXscaleOutput(status=None, lp_file=None, hkl_file=None, succeeded=None)[source]#

Bases: XSDataResult

property hkl_file#: Property for hkl_file

property lp_file#: Property for lp_file

property succeeded#: Property for succeeded

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXscaleParsedOutput(status=None, completeness_entries=None, total_completeness=None)[source]#

Bases: XSDataResult

property completeness_entries#: Property for completeness_entries

property total_completeness#: Property for total_completeness

class mxcubecore.HardwareObjects.XSDataAutoprocv1_0.XSDataXscaleParsingInput(configuration=None, lp_file=None)[source]#

Bases: XSDataInput

property lp_file#: Property for lp_file