mxcubecore.HardwareObjects.abstract.AbstractSampleView#

Abstract class for a Sample View. Defines methods to handle snapshots, animation and shapes.

Classes

AbstractSampleView(name)

AbstractSampleView Class

class mxcubecore.HardwareObjects.abstract.AbstractSampleView.AbstractSampleView(name)[source]#

Bases: HardwareObject

AbstractSampleView Class

abstract add_shape(shape)[source]#: Add the shape <shape> to the dictionary of handled shapes. :param shape: Shape to add :type shape: Shape

abstract add_shape_from_mpos(mpos_list, screen_cord, _type)[source]#

Add a shape of type <t>, with motor positions from mpos_list and screen position screen_coord. :param mpos_list: List of motor positions :type mpos_list: list[mpos_list] :param screen_coord: Screen cordinate for shape :type screen_coord: tuple(x, y :param _type: Type str for shape, P (Point), L (Line), G (Grid) :type _type: str

Returns:: Shape of type _type
Return type:: (Shape)

property backlight#: Get Back light object. :returns: Back light hardware object. :rtype: (AbstractLight)

property camera#: Get camera object. :returns: Camera hardware object. :rtype: (AbstractCamera)

abstract cancel_centring()[source]#: Cancels current centring procedure

abstract clear_all()[source]#: Clear the shapes, remove all contents.

abstract de_select_all()[source]#: De-select all shapes.

abstract de_select_shape(sid)[source]#: De-select the shape with id <sid>. :param sid: The id of the shape to de-select. :type sid: str

abstract delete_shape(sid)[source]#

Remove the shape with specified id from the list of handled shapes. :param sid: The id of the shape to remove :type sid: str

Returns:: The removed shape
Return type:: (Shape)

property frontlight#: Get Front light object :returns: Front light hardware object. :rtype: (AbstractLight)

abstract get_grid()[source]#: Get the first of the selected grids, (the one that was selected first in a sequence of select operations). :returns: The first selected grid as a dictionary. :rtype: (dict)

abstract get_grids()[source]#: Get all currently handled grids. :returns: All grids currently handled as list. :rtype: (list)

abstract get_lines()[source]#

Get all the currently handled lines.

Returns:: All lines currently handled as list.
Return type:: (list)

abstract get_points()[source]#: Get all currently handled centred points. :returns: All points currently handled as list. :rtype: (list)

abstract get_selected_shapes()[source]#: Get all selected shapes. :returns: (list) List of the selected Shapes.

abstract get_shape(sid)[source]#

Get Shape with id <sid>.

Parameters:: sid (str) – id of Shape to retrieve
Returns:: (Shape) All the shapes

abstract get_snapshot(overlay=True, bw=False, return_as_array=False)[source]#: Get snappshot(s) :param overlay: Display shapes and other items on the snapshot :type overlay: bool :param bw: return grayscale image :type bw: bool :param return_as_array: return as np array :type return_as_array: bool

abstract inc_used_for_collection(cpos)[source]#: Increase the counter that keepts on collect made on this shape, shape with associated CentredPosition cpos. :param cpos: CentredPosition of shape :type cpos: CentredPosition

abstract is_selected(sid)[source]#

Check if Shape with specified id is selected. :param sid: Shape id. :type sid: int

Returns:: (Boolean) True if selected, False otherwise.

save_scene_animation(filename, duration=1)[source]#: Take snapshots and create an animation. :param filename: The filename. :type filename: str :param duration: Duration time [s]. :type duration: int

abstract save_snapshot(filename, overlay=True, bw=False)[source]#: Save a snapshot to file. :param filename: The filename. :type filename: str :param overlay: Display shapes and other items on the snapshot. :type overlay: bool :param bw: Return grayscale image. :type bw: bool

abstract select_shape(sid)[source]#: Select the shape <shape>. :param sid: Id of the shape to select. :type sid: str

abstract select_shape_with_cpos(cpos)[source]#: Selects shape with the assocaitaed centred posotion <cpos> :param cpos: Centred position :type cpos: CentredPosition

property shapes#: Get shapes dict. :returns: Shapes hardware object. :rtype: (AbstractShapes)

abstract start_auto_centring()[source]#: Start automatic centring procedure

abstract start_centring(tree_click=True)[source]#: Starts centring procedure

property zoom#: Get zoom object. :returns: Zoom gardware object. :rtype: (AbstractZoom)