mxcubecore.HardwareObjects.Harvester#
[Name] Harvester
[Description] Harvester is use as a replacement of the Dewar sample storage This hardware object is use in couple with a Sample changer. Sample changer load the sample from Harvester instead of dewar. It is compatible with the Crystal Direct Harvester 3. It has some functionalities, like Harvest Sample, etc….
[Commands]
getSampleList : Get list of available sample from Harvester
Harvest : Harvest sample make it ready to load
- [Example xml file:]
- <object class=”Harvester”>
<username>harvester</username> <exporter_address>wid30harvest:9001</exporter_address>
</object>
Classes
|
Harvester functionality |
Enumeration of Harvester states |
- class mxcubecore.HardwareObjects.Harvester.Harvester(name)[source]#
Bases:
HardwareObjectHarvester functionality
The Harvester Class consists of methods that execute exporter commands this class communicate with the Crystal Direct Harvester Machine
- check_crystal_state(crystal_uuid: str) str | None[source]#
Check wether if a Crystal is in pending_and_current or not
Args (str) : Crystal uuid
Return (str): status of the crystal_uuid pending / current
- current_crystal_state(crystal_uuid: str) str[source]#
get current crystal state
Args: state (str) : Crystal uuid
Return (str): State of the crystal uuid
- get_calibrated_pin_offset() tuple[float][source]#
Get Stored x , y , z offsets position after calibration procedure
return: (float) x, y, z offsets
- get_crystal_images_urls(crystal_uuid: str) str[source]#
Get the Harvester Sample List Images
Args (str) : Crystal uuid
Return (str): image_url from current processing plan for current crystal uuid”
- get_crystal_uuids() list[str][source]#
Get the Harvester Sample List uuid
Return (List): list of crystal by uuid from the current processing plan”
- get_current_crystal() str[source]#
Get the Harvester current harvested crystal
Return (str): the crystal uuid
- Return type:
- get_image_target_x(crystal_uuid: str) float[source]#
Get the crystal images position x
Args (str) : Crystal uuid
Return (float): Crystal x coordinate in plate
- get_image_target_y(crystal_uuid: str) float[source]#
Get the crystal images position Y
Args (str) : Crystal uuid
Return (float): Crystal Y coordinate in plate
- get_last_pin_cut_shape_offset_x() float[source]#
Pin shape Offset x position Return (float): last pin cut shape offset x
- Return type:
- get_last_pin_cut_shape_offset_y() float[source]#
Pin shape Offset Y position Return (float): last pin cut shape offset y
- Return type:
- get_last_sample_drift_offset_x() float[source]#
Sample Offset X position when drifted Return (float): last pin drift offset x
- Return type:
- get_last_sample_drift_offset_y() float[source]#
Sample Offset Y position when drifted Return (float): last pin drift offset y
- Return type:
- get_last_sample_drift_offset_z() float[source]#
Sample Offset Z position when drifted Return (float): last pin drift offset z
- Return type:
- get_number_of_available_pin() int[source]#
Get number of available pin
return: (Integer)
- Return type:
- get_offsets_for_sample_centering() tuple[float][source]#
Calculate sample centering offsets based on Harvested pin shape pre-calculated offsets
Return (tuple(float)): (phiy_offset, centringFocus, centringTableVertical)
- get_room_temperature_mode() bool[source]#
get RoomTemperature Mode state
Args (str) : Crystal uuid
Return (bool): TemperatureMode , True if Room Temp else False
- Return type:
- get_sample_acronyms() list[str][source]#
Get the Harvester Sample List by Acronyms
Return (List): list of crystal by Acronyms from the current processing plan”
- get_sample_names() list[str][source]#
Get the Harvester Sample List Name
Return (List): list of crystal by names from the current processing plan”
- get_samples_state() list[str][source]#
Get the Harvester Samples State
Return (List): list of crystal state “waiting_for_transfer, Running etc..”
- get_state() str[source]#
Get the Harvester State
Return (str): state “Ready, Running etc..”
- Return type:
- harvest_sample_before_mount(sample_uuid: str, wait_before_load: bool = False) bool[source]#
- send harvest sample command
Check and set the current state of the Harvester and the sample before Harvest
Return (bool): whether the sample has been harvest then mount (True) or had and exception (False)
- is_crystal_harvested(crystal_uuid: str) str[source]#
Check Whether if the current crystal is harvested
args: the crystal uuid
Return (bool): True if the crystal is the current harvested crystal
- load_plate(plate_id: str) str[source]#
Change Harvester current plate
Args (str) : Plate ID Return (str) : current Plate ID
- queue_harvest_next_sample(data_model, sample_uuid: str, current_queue: dict)[source]#
While queue execution send harvest request on next sample of the queue list current_queue : a build representation of the queue based on python dictionaries
- queue_harvest_sample(data_model, sample_uuid: str, current_queue: dict) None[source]#
While queue execution send harvest request current_queue : a build representation of the queue based on python dictionaries
- set_calibration_state(state: bool)[source]#
Set Calibration state
Args: state (bool) : Whether a calibration procedure is on going
- Parameters:
state (bool) –
- set_room_temperature_mode(value: bool) bool[source]#
Set Harvester temperature mode
Args: (bool) set room temperature when true
Return (bool): TemperatureMode